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Table 2 Effect of homologous recombination mutations on the ability of the sgs1 mec3 mutant to accumulate GCRs and form rearrangements between the CAN1, LYP 1 and ALP1 genes.

From: Differential genetic interactions between Sgs1, DNA-damage checkpoint components and DNA repair factors in the maintenance of chromosome stability

 

All GCR

typesa

CAN1/LYP1/ALP1

translocationsb

Relevant genotype

Rate

95% CI

Rate

Frequency

wildtype

1.1

< 1-6.2

ND

ND

rad51 a

< 8

< 7-15

ND

ND

rad52

138

16-267

ND

ND

rad59

24

13-50

ND

ND

sgs1 a

220

144-276

< 7.3

0/30

mec3 a

46

18-75

< 1.5

0/30

sgs1 rad59

126

107-300

ND

ND

sgs1 rad59 rad51

118

49-154

ND

ND

sgs1 mec3 a

1297

1120-2030

173

20/150

sgs1 mec3 rad51 a

1491

NDc

198

4/30

sgs1 mec3 rad52 a

3168

NDc

< 23

0/136

sgs1 mec3 rad59

2476

1595-3187

16

1/158

sgs1 mec3 rad59 rad51

1124

734-1460

7

1/168

  1. a Median rate of cells resistant to canavanine and 5-FOA (Canr 5-FOAr × 10-10). 95% confidence intervals (CIs) for median GCR rates were calculated according to Nair [80], where non-overlapping confidence intervals indicate statistically significant differences between median GCR rates. GCR rates for wildtype [81], sgs1 [82], mec3, sgs1 mec3 [60], rad51, sgs1 mec3 rad51 and sgs1 mec3 rad52 mutants [10] were reported previously and are included for comparison.
  2. b Rate of accumulating translocations between CAN1, LYP1 and/or ALP1 (Canr 5-FOAr × 10-10). GCR clones from sgs1, mec3, sgs1 mec3, sgs1 mec3 rad51, sgs1 mec3 rad52 were previously screened for CAN1/LYP1/ALP1 translocations [10, 60]. ND, not determined.
  3. c To determine 95% CIs for sgs1 mec3 rad51 and sgs1 mec3 rad52 mutants, GCR rates were re-measured for the current study. The GCR rate for the sgs1 mec3 rad51 mutant was 1933 × 10-10 (95% CIs: 601-2240 × 10-10) and the GCR rate for the sgs1 mec3 rad52 mutant was 2220 × 10-10 (951-3470 × 10-10). The previously reported rates fall within the 95% CIs determined in the current study.