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Table 2 Copy number variation events larger than 10 kb

From: Assessment of genome integrity with array CGH in cattle transgenic cell lines produced by homologous recombination and somatic cell cloning

No Type Chr Start End Length Log R Shared
1 Self1 chr13 48,998,999 49,016,999 18,000 0.5168 Yes
   chr3 1,020,294 1,039,699 19,405 0.6721 Yes
   chr4 41,465,452 41,496,569 31,117 0.6946 Yes
2 High1 chr13 48,992,999 49,010,999 18,000 0.6269 Yes
   chr3 1,020,294 1,039,699 19,405 0.6410 Yes
   chr4 33,570,495 33,584,300 13,805 0.5216 Yes
   chr4 41,465,452 41,496,569 31,117 0.5674 Yes
3 Low1 chr13 48,991,360 49,017,997 26,637 0.6818 Yes
   chr29 19,400,430 19,449,274 48,844 0.5343 Yes
   chr3 1,020,294 1,042,839 22,545 0.7566 Yes
   chr4 41,465,452 41,496,569 31,117 0.8130 Yes
4 Self2 chr13 48,991,360 49,017,997 26,637 0.5172 Yes
   chr3 1,020,294 1,042,839 22,545 0.6039 Yes
   chr4 41,465,452 41,496,569 31,117 0.5761 Yes
5 High2 chr25 32,373,045 32,464,814 91,769 0.6769 Yes
6 Low2 chr11 87,532,580 87,543,090 10,510 -0.5617 No
   chr2 16,958,057 16,968,620 10,563 -0.5814 No
   chr25 32,374,157 32,471,634 97,477 -0.8136 Yes
   chr29 43,204,051 43,223,301 19,250 -0.5334 No
   chrX 10,447,331 10,457,486 10,155 -0.9137 No
7 Self3 chr1 5,249,999 5,285,999 36,000 0.5481 Yes
   chr10 59,478,526 59,531,204 52,678 0.5501 No
   chr13 48,991,360 49,017,997 26,637 0.6809 Yes
   chr15 26,576,999 26,602,199 25,200 0.6474 Yes
   chr2 39,223,655 39,235,168 11,513 -0.5661 No
   chr25 32,374,157 32,471,634 97,477 -0.6113 Yes
   chr29 19,399,250 19,449,274 50,024 0.6094 Yes
   chr3 1,020,294 1,039,699 19,405 0.8678 Yes
   chr4 27,707,990 27,750,008 42,018 0.5614 No
   chr4 41,465,452 41,496,569 31,117 0.8426 Yes
   chr6 45,738,703 45,776,348 37,645 0.5049 Yes
   chr6 89,209,799 89,220,599 10,800 0.6477 Yes
   chr8 36,073,799 36,145,799 72,000 0.5122 Yes
   chrX 37,290,568 37,303,155 12,587 0.8150 No
   chrX 37,564,199 37,614,599 50,400 0.5427 No
   chrX 56,120,456 56,149,298 28,842 0.6124 No
   chrX 84,230,177 84,255,543 25,366 0.5679 No
   chrX 138,374,999 138,386,999 12,000 0.5528 No
8 High3 chr13 48,993,325 49,013,328 20,003 0.5149 Yes
   chr15 26,576,999 26,602,199 25,200 0.6022 Yes
   chr25 32,374,157 32,403,637 29,480 -0.8278 Yes
   chr4 33,564,599 33,578,999 14,400 0.5363 Yes
   chr4 41,466,599 41,495,399 28,800 0.5097 Yes
   chr6 45,744,065 45,772,999 28,934 0.5284 Yes
9 Low3 chr1 5,249,999 5,285,999 36,000 0.5559 Yes
   chr1 144,107,850 144,130,905 23,055 0.5949 No
   chr13 48,991,360 49,017,997 26,637 0.6031 Yes
   chr17 73,139,605 73,159,081 19,476 -2.0603 No
   chr18 6,080,815 6,121,152 40,337 -0.5749 No
   chr25 32,362,844 32,470,747 107,903 0.6669 Yes
   chr29 19,412,812 19,444,215 31,403 0.6690 Yes
   chr3 1,020,599 1,038,599 18,000 0.6787 Yes
   chr4 33,564,599 33,578,999 14,400 0.6100 Yes
   chr4 41,465,452 41,487,890 22,438 0.6229 Yes
   chr6 89,208,198 89,218,288 10,090 0.6937 Yes
   chr8 36,077,399 36,152,999 75,600 0.5089 Yes
   chrU 12,620,478 12,665,758 45,280 0.7441 No
10 Self4 chr13 48,992,999 49,010,999 18,000 0.5729 Yes
  1. Chr: chromosome, Log R: log2Ratio, Shared: Yes/No - events shared among samples (i.e. hybridizations) or not.